Tutorials

A complete tutorial notebook is available at:

tutorials/embed-and-finetune-sample.ipynb

Additional required packages (scGPT, UNI dependencies) must be installed manually. Follow the instructions at: https://github.com/bowang-lab/scGPT

We also provide a ready-to-use environment file:

spatialfusion_env.yml

Tutorial data is available on Zenodo: https://zenodo.org/records/17594071